Single cell atlas of the human retina - Retinal ganglion cell subclass

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Cell Metadata

MG_OFF

Ontology Term: midget ganglion cell of retinaCL:4023188
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: midget retinal ganglion cellCL:4023188
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ADAMTSL3, SORCS1, PYGL, NLGN1, MAML2, LIFR, SOX6, SVEP1, CUSTOM1, CUSTOM2
Canonical Marker Genes: unknown
Rationale: 99.8%scRNA_MG-OFF of the Sanes dataset;97.9%nShekhar_MG_OFF of the Shekhar dataset;98.4%macaque_MG_OFF of the macaque dataset;31.5%mouse_27_Novel+17.7%mouse_21_Tbr1_S2 of the mouse dataset;Known markers are curated from human, macaque and mouse markers.

Set of Labels Description: A total of 15 retinal ganglion cell clusters is identified from over 99K retinal ganglion cell nulcei in the current atlas. Utilizing previoulsy characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual

Ontology Term: midget ganglion cell of retinaCL:4023188
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: midget retinal ganglion cellCL:4023188
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ADAMTSL3, SORCS1, PYGL, NLGN1, MAML2, LIFR, SOX6, SVEP1, CUSTOM1, CUSTOM2
Canonical Marker Genes: unknown
Rationale: 99.8%scRNA_MG-OFF of the Sanes dataset;97.9%nShekhar_MG_OFF of the Shekhar dataset;98.4%macaque_MG_OFF of the macaque dataset;31.5%mouse_27_Novel+17.7%mouse_21_Tbr1_S2 of the mouse dataset;Known markers are curated from human, macaque and mouse markers.

Set of Labels Description: A total of 15 retinal ganglion cell clusters is identified from over 99K retinal ganglion cell nulcei in the current atlas. Utilizing previoulsy characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual