Single cell atlas of the human retina - Retinal ganglion cell subclass

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Cell Metadata

OPN4

Ontology Term: retinal ganglion cellCL:0000740
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: RGC, RGCs, ganglion cell of retina, gangliocyte
Category Class of which the cell type is a subclass.: intrinsically photosensitive retinal ganglion cellsCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AL445433.2, CAMK2A, CDH6, CHL1, CPA6, CPNE8, DMD, KIAA1217, KIRREL3, NDST4, OPRM1, PLPPR5, RASGRP1, TGFA
Canonical Marker Genes: unknown
Rationale: 76.1%scRNA_hRGC5 of the Sanes dataset;81.9%nShekhar_RGC6 of the Shekhar dataset;83.9%macaque_RGC15 of the macaque dataset;98.2%mouse_7_Novel of the mouse dataset;Known markers are curated from human, macaque and mouse markers.

Set of Labels Description: A total of 15 retinal ganglion cell clusters is identified from over 99K retinal ganglion cell nulcei in the current atlas. Utilizing previoulsy characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual

Ontology Term: retinal ganglion cellCL:0000740
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: RGC, RGCs, ganglion cell of retina, gangliocyte
Category Class of which the cell type is a subclass.: intrinsically photosensitive retinal ganglion cellsCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AL445433.2, CAMK2A, CDH6, CHL1, CPA6, CPNE8, DMD, KIAA1217, KIRREL3, NDST4, OPRM1, PLPPR5, RASGRP1, TGFA
Canonical Marker Genes: unknown
Rationale: 76.1%scRNA_hRGC5 of the Sanes dataset;81.9%nShekhar_RGC6 of the Shekhar dataset;83.9%macaque_RGC15 of the macaque dataset;98.2%mouse_7_Novel of the mouse dataset;Known markers are curated from human, macaque and mouse markers.

Set of Labels Description: A total of 15 retinal ganglion cell clusters is identified from over 99K retinal ganglion cell nulcei in the current atlas. Utilizing previoulsy characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual