Single cell atlas of the human retina - Retinal ganglion cell subclass

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Cell Metadata

PG_OFF

Ontology Term: parasol ganglion cell of retinaCL:4023189
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: M cell, M ganglion cell
Category Class of which the cell type is a subclass.: parasol retinal ganglion cellCL:4023189
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AIM2, C8orf34, CDH4, CHSY3, COL24A1, FHOD3, FLRT2, GALNT14, MCC, KCNQ5, KCNIP1, MGAT5B, PLCL1, STXBP6, SORCS3, WWC1, USH2A, TESC
Canonical Marker Genes: unknown
Rationale: 98.4%scRNA_PG-OFF of the Sanes dataset;99.7%nShekhar_PG_OFF of the Shekhar dataset;47.5%macaque_RGC1721.3%macaque_MG_ON of the macaque dataset;74.2%mouse_15_Novel10.8%mouse_3_FminiON of the mouse dataset;Known markers are curated from human, macaque and mouse markers.

Set of Labels Description: A total of 15 retinal ganglion cell clusters is identified from over 99K retinal ganglion cell nulcei in the current atlas. Utilizing previoulsy characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual

Ontology Term: parasol ganglion cell of retinaCL:4023189
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: M cell, M ganglion cell
Category Class of which the cell type is a subclass.: parasol retinal ganglion cellCL:4023189
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AIM2, C8orf34, CDH4, CHSY3, COL24A1, FHOD3, FLRT2, GALNT14, MCC, KCNQ5, KCNIP1, MGAT5B, PLCL1, STXBP6, SORCS3, WWC1, USH2A, TESC
Canonical Marker Genes: unknown
Rationale: 98.4%scRNA_PG-OFF of the Sanes dataset;99.7%nShekhar_PG_OFF of the Shekhar dataset;47.5%macaque_RGC1721.3%macaque_MG_ON of the macaque dataset;74.2%mouse_15_Novel10.8%mouse_3_FminiON of the mouse dataset;Known markers are curated from human, macaque and mouse markers.

Set of Labels Description: A total of 15 retinal ganglion cell clusters is identified from over 99K retinal ganglion cell nulcei in the current atlas. Utilizing previoulsy characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual