snRNA-seq of human retina - retinal ganglion cell subset

Main

Cell Metadata

MG_OFF

Ontology Term: midget ganglion cell of retinaCL:4023188
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: retinal ganglion cellCL:0000740
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ADAMTSL3, GRB14, LIFR, MAML2, MYLIP, NLGN1, PYGL, SORCS1, SOX6, SVEP1
Canonical Marker Genes: TBR1
Rationale: 97.0%MG-OFF of the Sanes dataset; 99.3%MG_OFF of the Shekhar dataset; 76.3%MG_OFF+23.7%Unassigned of the macaque dataset; 80.8%17_Tbr1_S1+14.8%Unassigned of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: A total of 11 retinal ganglion cell clusters were identified from over 399K retinal ganglion cell nuclei in the current atlas. Utilizing previously characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual

Ontology Term: midget ganglion cell of retinaCL:4023188
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: retinal ganglion cellCL:0000740
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ADAMTSL3, GRB14, LIFR, MAML2, MYLIP, NLGN1, PYGL, SORCS1, SOX6, SVEP1
Canonical Marker Genes: TBR1
Rationale: 97.0%MG-OFF of the Sanes dataset; 99.3%MG_OFF of the Shekhar dataset; 76.3%MG_OFF+23.7%Unassigned of the macaque dataset; 80.8%17_Tbr1_S1+14.8%Unassigned of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: A total of 11 retinal ganglion cell clusters were identified from over 399K retinal ganglion cell nuclei in the current atlas. Utilizing previously characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual