All cells from human liver dataset

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Cell Metadata

T cells

Ontology Term: T cellCL:0000084
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: lymphocyteCL:0000542
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: IL7R, CD40LG, CD3D, CD3G, CD8B, TRAT1, CD8A, SIT1, GPR171, CD3E
Canonical Marker Genes: CD3E, CD3G, CD3D
Rationale: All T cells (not further divided into subsets). Marker genes are top 10 DEGs for these cells compared to rest of UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: T cellCL:0000084
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: lymphocyteCL:0000542
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: IL7R, CD40LG, CD3D, CD3G, CD8B, TRAT1, CD8A, SIT1, GPR171, CD3E
Canonical Marker Genes: CD3E, CD3G, CD3D
Rationale: All T cells (not further divided into subsets). Marker genes are top 10 DEGs for these cells compared to rest of UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual