CD45 negative cells from human liver dataset

Main

Cell Metadata

VSMCs

Ontology Term: vascular associated smooth muscle cellCL:0000359
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: smooth muscle cellCL:0000192
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MYH11, IRAG1, ATP1B3, TPM2, MYL9, SPARCL1, ACTA2, NR4A3, SOD3, LMOD1
Canonical Marker Genes: MYL9
Rationale: Marker genes are top 10 DEGs for this cell population compared with others in this UMAP (from Table S3 in publication).

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: vascular associated smooth muscle cellCL:0000359
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: smooth muscle cellCL:0000192
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MYH11, IRAG1, ATP1B3, TPM2, MYL9, SPARCL1, ACTA2, NR4A3, SOD3, LMOD1
Canonical Marker Genes: MYL9
Rationale: Marker genes are top 10 DEGs for this cell population compared with others in this UMAP (from Table S3 in publication).

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual