CD45 negative cells from human liver dataset

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Cell Metadata

LSECs

Ontology Term: endothelial cell of hepatic sinusoidCL:1000398
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: fenestrated endothelial cellCL:0000666
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLEC1B, OIT3, FCN3, IL13RA2, MS4A6A, DNASE1L3, CCL23, STAB2, CRHBP, CLEC4M
Canonical Marker Genes: LYVE1, KDR, FLT1
Rationale: The marker genes are the top 10 DEGs for these cells compared with other cells in the UMAP (from Table S3 in publication). Other key genes in list of DEGs used to define these cells include LYVE1, KDR and FLT1.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: endothelial cell of hepatic sinusoidCL:1000398
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: fenestrated endothelial cellCL:0000666
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLEC1B, OIT3, FCN3, IL13RA2, MS4A6A, DNASE1L3, CCL23, STAB2, CRHBP, CLEC4M
Canonical Marker Genes: LYVE1, KDR, FLT1
Rationale: The marker genes are the top 10 DEGs for these cells compared with other cells in the UMAP (from Table S3 in publication). Other key genes in list of DEGs used to define these cells include LYVE1, KDR and FLT1.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual