snRNA-seq of human optic nerve and optic nerve head - endothelial cells

Main

Cell Metadata

Summary

We identified 7 cell types/states of endothelial cells from over 10,000 snRNA-seq cells derived from human optic nerve and optic nerve head.

Dataset Type: Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
Total Cells: 34,934
organism: Homo sapiens
assay: 10x 3' v3
disease: normal
tissue: cranial nerve II (23,287 cells)optic disc (11,647 cells)

Description

We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression.

Annotation Method

both

11,111

9,481

6,580

3,366

2,007

1,779

610

We identified 7 cell types/states of endothelial cells from over 10,000 snRNA-seq cells derived from human optic nerve and optic nerve head.

Dataset Type: Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
Total Cells: 34,934
organism: Homo sapiens
assay: 10x 3' v3
disease: normal
tissue: cranial nerve II (23,287 cells)optic disc (11,647 cells)