Summary
Habenula glutamatergic neurons
Metadata
- Dataset Type
- Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
- Total Cells
- 10,770
- organism
- Mus musculus
- disease
- normal
- assay
- 10x 3' v3 (5,385 cells)10x 3' v2 (5,385 cells)
- tissue
- dorsal plus ventral thalamus (10,726 cells)midbrain (35 cells)hypothalamus (6 cells)striatum (2 cells)hippocampal formation (1 cells)
Cell Labels
Description
The top level of cell type definition in the mouse whole brain taxonomy. It is primarily determined by broad brain region and neurotransmitter type. All cells within a subclass belong to the same class. Class provides a broader categorization of cell types.
Annotation Method
manual
Description
The finest level of cell type definition in the mouse whole brain taxonomy. Cells within a cluster share similar characteristics and belong to the same supertype.
Annotation Method
manual
Description
The coarse level of cell type definition in the mouse whole brain taxonomy. All cells within a supertype belong to the same subclass. Subclass groups together related supertypes.
Annotation Method
manual
Description
The second finest level of cell type definition in the mouse whole brain taxonomy. All cells within a cluster belong to the same supertype. Supertype groups together similar clusters.
Annotation Method
manual
